Paper - List

Paper reading list

Index Title Time (Korean Standard Time) DOI Paper Link Review Link
205 Senescent alveolar macrophages promote early-stage lung tumorigenesis 2023-08-11 15:39:06 10.1016/j.ccell.2023.05.006
204 Clearance of senescent macrophages ameliorates tumorigenesis in KRAS-driven lung cancer 2023-08-11 15:38:37 10.1016/j.ccell.2023.05.004
203 The repertoire of mutational signatures in human cancer 2023-08-09 14:42:40 10.1038/s41586-020-1943-3
202 The vaginal microbiome as a predictor for outcome of in vitro fertilization with or without intracytoplasmic sperm injection: a prospective study 2023-08-03 19:11:43 10.1093/humrep/dez065
201 Identification and evaluation of the microbiome in the female and male reproductive tracts 2023-08-03 19:11:20 10.1093/humupd/dmy048
200 Loss of chromosome Y in primary tumors 2023-07-25 13:48:59 10.1016/j.cell.2023.06.006
199 Predicting benefit from immune checkpoint inhibitors in patients with non-small-cell lung cancer by CT-based ensemble deep learning: a retrospecitive study 2023-07-25 13:48:36 10.1016/S2589-7500(23)00082-1
198 Dynamics of the urinary microbiome in pregnancy and the coincidental predictive value of the microbiota for IVF/IVF-ICSI outcome 2023-07-10 13:58:19 10.1016/j.rbmo.2021.07.018
197 Nine quick tips for analyzing network data 2023-07-05 12:53:33 10.1371/journal.pcbi.1007434
196 Periodontitis: facts, fallacies and the future 2023-07-04 21:00:32 10.1111/prd.12221
195 Neopepsee: accurate genome-level prediction of neoantigens by harnessing sequence and amino acid immunogenicity information 2023-07-04 19:13:06 10.1093/annonc/mdy022
194 Targeting neoantigens to augment antitumor immunity 2023-06-29 15:46:22 10.1038/nrc.2016.154
193 The diverse consequences of aneuploidy 2023-06-28 19:18:49 10.1038/s41556-018-0243-8
192 Characteristics of Tumor Infiltrating Lymphocyte and Circulating Lymphocyte Repertoires in Pancreatic Cancer by the Sequencing of T Cell Receptors 2023-06-22 20:13:33 10.1038/srep13664
191 Personalized T cell-mediated cancer immunotherapy: progress and challenges 2023-06-21 20:08:14 10.1016/j.copbio.2017.03.024
190 Mapping the Genetic Landscape of Human Cells 2023-06-21 18:16:03 10.1016/j.cell.2018.06.010
189 Normalizing single-cell RNA sequencing data: challenges and opportunities 2023-06-21 16:56:29 10.1038/nmeth.4292
188 Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment 2023-06-19 19:49:05 10.1016/j.cell.2018.05.060
187 Microbial transmission from mothers with obesity or diabetes to infants: an innovative opportunity to interrupt a vicious cycle 2023-06-14 16:03:57 10.1007/s00125-016-3880-0
186 Diversified gut microbiota in newborns of mothers with gestational diabetes mellitus 2023-06-14 16:03:38 10.1371/journal.pone.0205695
185 The microbiome during pregnancy and early postnatal life 2023-06-12 17:44:40 10.1016/j.siny.2016.05.001
184 Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life 2023-06-12 08:16:55 10.1016/j.chom.2015.04.004
183 Genomic–transcriptomic evolution in lung cancer and metastasis 2023-05-24 16:41:32 10.1038/s41586-023-05706-4
182 The evolution of lung cancer and impact of subclonal selection in TRACERx 2023-05-23 10:24:58 10.1038/s41586-023-05783-5
181 The evolution of non-small cell lung cancer metastases in TRACERx 2023-05-19 12:59:22 10.1038/s41586-023-05729-x
180 Species abundance information improves sequence taxonomy classification accuracy 2023-05-16 11:11:10 10.1038/s41467-019-12669-6
179 Emerging role of exosomes in cancer progression and tumor microenvironment remodeling 2023-05-16 11:10:56 10.1186/s13045-022-01305-4
178 Tumor microenvironment remodeling after neoadjuvant immunotherapy in non-small cell lung cancer revealed by single-cell RNA sequencing 2023-04-25 16:13:30 10.1186/s13073-023-01164-9
177 Transcriptomic and immunophenotypic profiling reveals molecular and immunological hallmarks of colorectal cancer tumourigenesis 2023-04-25 14:51:33 10.1136/gutjnl-2022-327608
176 Genomic and transcriptomic analysis of checkpoint blockade response in advanced non-small cell lung cancer 2023-04-17 10:55:13 10.1038/s41588-023-01355-5
175 Interactions between the microbiome and mating influence the female’s transcriptional profile in Drosophila melanogaster 2023-03-31 19:01:05 10.1038/s41598-020-75156-9
174 Preneoplastic stromal cells promote BRCA1-mediated breast tumorigenesis 2023-03-27 18:51:54 10.1038/s41588-023-01298-x
173 Methylated DNA Immunoprecipitation and High-Throughput Sequencing (MeDIP-seq) Using Low Amounts of Genomic DNA 2023-03-27 17:46:51 10.1089/cell.2014.0002
172 Direct on-swab metabolic profiling of vaginal microbiome host interactions during pregnancy and preterm birth 2023-03-17 10:08:52 10.1038/s41467-021-26215-w
171 A Genetic Map of the Response to DNA Damage in Human Cells 2023-02-28 20:34:46 10.1016/j.cell.2020.05.040
170 Fasting-mimicking diet and hormone therapy induce breast cancer regression 2023-02-27 14:50:24 10.1038/s41586-020-2502-7
169 Erythrocyte indices and localized stage II/III periodontitis in military young men and women: CHIEF oral health study 2023-02-21 14:57:05 10.1186/s12903-022-02455-0
168 Determinants of Response and Intrinsic Resistance to PD-1 Blockade in Microsatellite Instability–High Gastric Cancer 2023-02-16 19:42:46 10.1158/2159-8290.CD-21-0219
167 LAG-3 expression on peripheral blood cells identifies patients with poorer outcomes after immune checkpoint blockade 2023-02-15 13:37:15 10.1126/scitranslmed.abf5107
166 Periodontal diseases and adverse pregnancy outcomes 2023-02-10 19:48:21 10.1111/jog.13782
165 Subgingival Microbiome in Pregnancy and a Potential Relationship to Early Term Birth 2023-02-10 19:25:27 10.3389/fcimb.2022.873683
164 Oral microbiome and pregnancy: A bidirectional relationship 2023-02-10 19:01:56 10.1016/j.jri.2021.103293
163 The pregnancy microbiome and preterm birthThe pregnancy microbiome and preterm birth 2023-02-08 11:19:52 10.1007/s00281-020-00817-w
162 Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment 2023-01-20 17:33:08 10.1158/1078-0432.CCR-19-3231
161 Comprehensive molecular characterization of clinical responses to PD-1 inhibition in metastatic gastric cancer 2023-01-20 17:10:30 10.1038/s41591-018-0101-z
160 Differential abundance analysis for microbial marker-gene surveys 2022-12-30 15:33:13 10.1038/nmeth.2658
159 Allele-Specific HLA Loss and Immune Escape in Lung Cancer Evolution 2022-12-29 14:36:13 10.1016/j.cell.2017.10.001
158 Spontaneous premature birth as a target of genomic research 2022-12-21 16:38:22 10.1038/s41390-018-0180-z
157 IL-18BP is a secreted immune checkpoint and barrier to IL-18 immunotherapy 2022-12-13 15:35:41 10.1038/s41586-020-2422-6
156 Tumor aneuploidy predicts survival following immunotherapy across multiple cancers 2022-12-01 18:00:34 10.1038/s41588-022-01235-4
155 Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab 2022-11-28 11:21:19 10.1016/j.cell.2017.09.028
154 Tumor-Infiltrating Lymphocyte Therapy and Neoantigens 2022-11-24 14:37:27 10.1097/PPO.0000000000000267
153 Application of single-cell sequencing in human cancer 2022-11-22 15:45:40 10.1093/bfgp/elx036
152 Cancer cell states recur across tumor types and form specific interactions with the tumor microenvironment 2022-11-21 15:37:03 10.1038/s41588-022-01141-9
151 Blood Microbial Communities During Pregnancy Are Associated With Preterm Birth 2022-11-18 15:30:02 10.3389/fmicb.2019.01122
150 Vaginal microbiome profiles of pregnant women in Korea using a 16S metagenomics approach 2022-11-18 14:43:20 10.1111/aji.13124
149 Prediction of preterm birth based on machine learning using bacterial risk score in cervicovaginal fluid 2022-11-17 10:57:49 10.1111/aji.13435
148 CRISPR applications in ophthalmologic genome surgery 2022-11-14 17:08:27 10.1097/ICU.0000000000000359
147 An immune checkpoint score system for prognostic evaluation and adjuvant chemotherapy selection in gastric cancer 2022-11-10 16:47:02 10.1038/s41467-020-20260-7
146 A novel risk score system of immune genes associated with prognosis in endometrial cancer 2022-11-09 13:25:30 10.1186/s12935-020-01317-5
145 The immune score as a new possible approach for the classification of cancer 2022-11-07 17:21:29 10.1186/1479-5876-10-1
144 Mutation Detection in Patients With Advanced Cancer by Universal Sequencing of Cancer-Related Genes in Tumor and Normal DNA vs Guideline-Based Germline Testing 2022-10-31 14:46:42 10.1001/jama.2017.11137
143 Divergent Routes toward Wnt and R-spondin Niche Independency during Human Gastric Carcinogenesis 2022-10-18 11:02:29 10.1016/j.cell.2018.07.027
142 PTBP1-Mediated Alternative Splicing Regulates the Inflammatory Secretome and the Pro-tumorigenic Effects of Senescent Cells 2022-10-07 18:08:06 10.1016/j.ccell.2018.06.007
141 Global Cancer Statistics 2020: GLOBOCAN Estimates of Incidence and Mortality Worldwide for 36 Cancers in 185 Countries 2022-10-05 08:55:45 10.3322/caac.21660
140 Clinical implications and utility of field cancerization 2022-09-22 08:51:34 10.1186/1475-2867-7-2
139 Field cancerization: Definition, epidemiology, risk factors, and outcomes 2022-09-19 13:09:43 10.1016/j.jaad.2020.03.126
138 An evolutionary perspective on field cancerization 2022-09-13 15:20:53 10.1038/nrc.2017.102
137 Genomic profiles and their associations with TMB, PD-L1 expression, and immune cell infiltration landscapes in synchronous multiple primary lung cancers 2022-09-06 15:39:30 10.1136/jitc-2021-003773
136 Deep whole-genome ctDNA chronology of treatment-resistant prostate cancer 2022-09-01 10:05:30 10.1038/s41586-022-04975-9
135 Spatial atlas of clonal copy number alterations in co-existing benign and malignant tissue 2022-08-31 10:51:11 10.1038/s41586-022-05023-2
134 Multi-omics analysis reveals RNA splicing alterations and their biological and clinical implications in lung adenocarcinoma 2022-08-29 16:08:21 10.1038/s41392-022-01098-5
133 CancerDetector: ultrasensitive and non-invasive cancer detection at the resolution of individual reads using cell-free DNA methylation sequencing data 2022-08-22 17:27:10 10.1093/nar/gky423
132 Single-cell analysis of human non-small cell lung cancer lesions refines tumor classification and patient stratification 2022-07-29 17:28:28 10.1016/j.ccell.2021.10.009
131 Mutational landscape of metastatic cancer revealed from prospective clinical sequencing of 10,000 patients 2022-07-25 07:55:09 10.1038/nm.4333
130 Food Processing: The Influence of the Maillard Reaction on Immunogenicity and Allergenicity of Food Proteins 2022-07-22 17:45:37 10.3390/nu9080835
129 IL-36γ is a pivotal inflammatory player in periodontitis-associated bone loss 2022-07-20 11:07:34 10.1038/s41598-019-55595-9
128 Fast gapped-read alignment with Bowtie 2 2022-07-18 15:09:14 10.1038/nmeth.1923
127 Single-cell analyses define a continuum of cell state and composition changes in the malignant transformation of polyps to colorectal cancer 2022-07-18 12:05:14 10.1038/s41588-022-01088-x
126 The pro-tumorigenic host response to cancer therapies 2022-07-13 18:47:57 10.1038/s41568-019-0209-6
125 Pan-cancer deconvolution of tumor composition using DNA methylation 2022-07-12 11:02:31 10.1038/s41467-018-05570-1
124 Discrimination of Bacterial Community Structure among Healthy, Gingivitis, and Periodontitis Statuses through Integrated Metatranscriptomic and Network Analyses 2022-07-04 16:15:47 10.1128/mSystems.00886-21
123 The proteogenomic subtypes of acute myeloid leukemia 2022-06-06 14:28:16 10.1016/j.ccell.2022.02.006
122 Theories of consciousness 2022-05-26 16:34:11 10.1038/s41583-022-00587-4
121 Lower Airway Dysbiosis Affects Lung Cancer Progression 2022-05-23 16:30:06 10.1158/2159-8290.CD-20-0263
120 Patterns of somatic structural variation in human cancer genomes 2022-05-20 14:57:47 10.1038/s41586-019-1913-9
119 Differential regulation of local mRNA dynamics and translation following long-term potentiation and depression 2022-05-09 10:34:53 10.1073/pnas.2017578118
118 Liquid biopsy: a step closer to transform diagnosis, prognosis and future of cancer treatments 2022-05-02 13:26:32 10.1186/s12943-022-01543-7
117 Pathogenic DDX3X Mutations Impair RNA Metabolism and Neurogenesis during Fetal Cortical Development 2022-04-28 09:54:24 10.1016/j.neuron.2020.01.042
116 Mice lacking the chromodomain helicase DNA-binding 5 chromatine remodeler display autism-like characteristics 2022-04-25 15:28:56 10.1038/tp.2017.111
115 Subgingival microbiota dysbiosis in systemic lupus erythematousus: association with perdiodontal status 2022-04-21 16:06:44 10.1186/s40168-017-0252-z
114 Gestational diabetes is associated with change in the gut microbiota composition in third trimester of pregnancy and postpartum 2022-04-20 20:18:21 10.1186/s40168-018-0472-x
113 Inferring gene expression from cell-free DNA fragmentations profiles 2022-04-18 13:41:13 10.1038/s41587-022-01222-4
112 Diversity and clonal selection in the human T-cell repertoire 2022-04-11 09:53:14 10.1073/pnas.1409155111
111 T-cell repertoire analysis and metrics of diversity and clonality 2022-04-08 00:30:29 10.1016/j.copbio.2020.07.010
110 Evolution of DNA methylome from precancerouse lesions to invasive lung adenocarcinomas 2022-04-04 18:38:05 10.1038/s41467-021-20907-z
109 Multi-region exome sequencing reveals genomic evolution from preneoplasia to lung adenocarcinoma 2022-04-01 14:44:54 10.1038/s41467-019-10877-8
108 Immune evolution from preneoplasia to invasive lung adenocarcinomas and underlying molecular features 2022-04-01 14:23:21 10.1038/s41467-021-22890-x
107 Anna Karenina and the subgingival microbiome associated with periodontitis 2022-04-01 14:08:43 10.1186/s40168-021-01056-3
106 Deciphering the genomic, epigenomic, and transcriptomic landscape of pre-invasive lung cancer lesions 2022-03-31 15:59:27 10.1038/s41591-018-0323-0
105 Widespread RNA editing dysregulation in brains from autistic individuals 2022-03-26 16:53:03 10.1038/s41593-018-0287-x
104 An introduction to decision tree modeling 2022-03-15 18:56:28 10.1002/cem.873
103 The Decision Tree Classifier: Design and Potential 2022-03-14 14:44:14 10.1109/TGE.1977.6498972
102 Oral biofilms exposure to chlorhexidine results in altered microbial composition and metabolic profile 2022-03-10 15:24:00 10.1038/s41522-020-0124-3
101 Polymicrobial periodontal disease triggers a wide radius of effect and unique virome 2022-03-10 14:55:16 10.1038/s41522-020-0120-7
100 Assessing saliva microbiome collection and processing methods 2022-03-10 13:35:59 10.1038/s41522-021-00254-z
99 Altered oral and gut microbiota and its association with SARS-CoV-2 viral load in COVID-19 patients during hospitalization 2022-03-10 11:21:29 10.1038/s41522-021-00232-5
98 Impact of the repurposed drug thonzonium bromide on host oral-gut microbiomes 2022-03-04 16:07:46 10.1038/s41522-020-00181-5
97 Multi-omics Analysis of Periodontal Pocket Microbial Communities Pre- and Post-treatment 2022-03-04 15:18:29 10.1128/mSystems.00016-17
96 Identification of Initial Colonizing Bacteria in Dental Plaques from Young Adults Using Full-length 16S rRNA Gene Sequencing 2022-03-03 19:47:18 10.1128/mSystems.00360-19
95 Periodontitis associated with species-specific gene expression of the oral microbiota 2022-03-03 18:44:36 10.1038/s41522-021-00247-y
94 Discrimination of Bacterial Community Structures among Healthy, Gingivitis, and Periodontitis Statuses through Integrated Metatranscriptomic and Network Analyses 2022-03-03 16:03:28 10.1128/mSystems.00886-21
93 Fetal meconium does not have a detectable microbiota before birth 2022-03-02 15:11:21 10.1038/s41564-021-00904-0
92 Correcting for batch effects in case-control microbiome studies 2022-02-28 11:24:58 10.1371/journal.pcbi.1006102
91 Tumor DNA methylation profiles correlate with response to anti-PD-1 immune checkpoint inhibitor monotherapy in sarcoma patients 2022-02-16 16:19:50 10.1136/jitc-2020-001458
90 Intestinal Akkermansia muciniphila predicts clinical response to PD-1 blockade in patients with advanced non-small-cell lung cancer 2022-02-04 17:59:13 10.1038/s41591-021-01655-5
89 Gut Microbiome Components Predict Response to Neoadjuvant Chemoradiotherapy in Patient with Locally Advanced Rectal Cancer: A Prospective, Longitudinal Study 2022-02-04 11:10:43 10.1158/1078-0432.CCR-20-3445
88 Notch signalling drives synovial fibroblast identity and arthritis pathology 2022-01-29 20:08:52 10.1038/s41586-020-2222-z
87 Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion 2022-01-29 19:47:57 10.1038/s41587-019-0206-z
86 The National Lung Matrix Trial of personalized therapy in lung cancer 2022-01-27 23:38:16 10.1038/s41586-020-2481-8
85 Neoantigen vaccination induces clinical and immunologic responses in non-small cell lung cancer patients harboring EGFR mutations 2022-01-26 19:37:37 10.1136/jitc-2021-002531
84 Comparing and contrasting predictive biomarkers for immunotherapy and targeted therapy of NSCLC 2022-01-17 14:31:39 10.1038/s41571-019-0173-9
83 Atezolizumab for First-Line Treatment of Metastatic Nonsquamous NSCLC 2022-01-17 13:55:16 10.1056/NEJMoa1716948
82 Understanding and targeting resistance mechanisms in NSCLC 2022-01-07 13:38:06 10.1038/nrc.2017.84
81 Temporal single-cell tracing reveals clonal revival and expansion of precursor exhausted T cells during anti-PD-1 therapy in lung cancer 2021-12-28 10:47:22 10.1038/s43018-021-00292-8
80 Non-small-cell lung cancer 2021-12-24 05:07:50 10.1038/nrdp.2015.9
79 The repertoire of mutational signatures in human cancer 2021-12-12 03:36:49 10.1038/s41586-020-1943-3
78 Contribution of resident and circulating precursors to tumor-infiltrating CD8+ T cell populations in lung cancer 2021-12-08 18:23:08 10.1126/SCIIMMUNOL.ABD5778
77 Non-small-cell lung cancer 2021-12-02 17:37:58 10.1016/S0140-6736(10)62101-0
76 NASH limits anti-tumour surveillance in immunotherapy-treated HCC 2021-11-30 15:46:05 10.1038/s41586-021-03362-0
75 Dysbiosis of maternal and neonatal microbiota associated with gestational diabetes mellitus 2021-11-17 16:26:19 10.1136/gutjnl-2018-315988
74 Landscape of tumor-infiltrating T cell repertoire of human cancers 2021-11-15 12:35:19 10.1038/ng.3581
73 A guide to cancer immunotherapy: from T cell basic science to clinical practice 2021-11-09 20:27:51 10.1038/s41577-020-0306-5
72 The immunobiology of hepatocellular carcinoma in humans and mice: Basic concepts and therapeutic implications 2021-10-27 12:59:45 10.1016/j.jhep.2019.08.014
71 Smallpox 2021-10-21 15:29:16 10.1016/S0140-6736(06)68143-9
70 Tobacco smoking and somatic mutations in human bronchial epithelium 2021-10-18 17:42:40 10.1038/s41586-020-1961-1
69 Mutational signatures associated with tobacco smoking in human cancer 2021-10-18 12:58:21 10.1126/science.aag0299
68 Therapy-Induced Evolution of Human Lung Cancer Revealed by Single-Cell RNA Sequencing 2021-10-13 13:59:36 10.1016/j.cell.2020.07.017
67 Comprehensive molecular profiling of lung adenocarcinoma 2021-10-07 14:09:50 10.1038/nature13385
66 Comprehensive genomic characterization of squamous cell lung cancers 2021-10-04 11:02:41 10.1038/nature11404
65 Single-Cell RNA Sequencing of Tumor-Infiltrating NK Cells Reveals that Inhibition of Transcription Factor HIF-1α Unleashes NK Cell Activity 2021-09-28 14:15:33 10.1016/j.immuni.2020.05.001
64 The complement system 2021-09-24 15:25:51 10.1007/s00441-010-1034-0
63 Context-dependent roles of complement in cancer 2021-09-22 14:22:18 10.1038/s41568-019-0210-0
62 Tracing Oncogene Rearrangements in the Mutational History of Lung Adenocarcinoma 2021-09-08 17:28:32 10.1016/j.cell.2019.05.013
61 Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods 2021-08-30 17:50:22 10.1186/s13059-019-1842-9
60 Molecular phenotyping reveals the identity of Barrett's esophagus and its malignant transition 2021-08-24 16:44:46 10.1126/science.abd1449
59 Accurate and efficient detection of gene fusions from RNA sequencing data 2021-08-23 16:05:24 10.1101/GR.257246.119
58 A proteogenomics portrait of lung squamous cell carcinoma 2021-08-18 18:06:04 10.1016/j.cell.2021.07.016
57 Tracing the evolution of aneuploid cancers by multiregional sequencing with CRUST 2021-08-13 16:20:59 10.1101/2020.11.11.376467
56 Context is everything: aneuploidy in cancer 2021-08-13 14:06:17 10.1038/s41576-019-0171-x
55 Formation of flavour compounds in the Maiilard reaction 2021-08-12 14:51:00 10.1016/j.biotechadv.2005.11.004
54 Signatures of T cell dysfunction and exclusion predict cancer immunotherapy response 2021-08-10 09:59:53 10.1038/s41591-018-0136-1
53 Can Personalized Neoantigens Raise the T Cell Bar? 2021-08-09 18:56:53 10.1016/j.cell.2020.09.053
52 Prenatal Maternal Stress Causes Preterm Birth and Affects Neonatal Adaptive Immunity in Mice 2021-08-06 12:37:50 10.3389/fimmu.2020.00254
51 Large-scale public data reuse to model immunotherapy response and resistance 2021-08-06 10:37:06 10.1186/s13073-020-0721-z
50 Personalied RNA mutanome vaccines mobilize poly-specific therapeutic immunity against cancer 2021-08-05 22:05:34 10.1038/nature23003
49 Single-cell RNA sequencing demonstrates the molecular and cellular reprogramming of metastatic lung adenocarcinoma 2021-08-05 20:47:07 10.1038/s41467-020-16164-1
48 Visualization methods for differential expression analysis 2021-08-02 10:35:23 10.1186/s12859-019-2968-1
47 The evolution of tumor phylogenetics: principles and practice 2021-07-08 18:42:38 10.1038/nrg.2016.170
46 Determining cell type abundance and expression from bulk tissues with digital cytometry 2021-06-25 19:18:25 10.1038/s41587-019-0114-2
45 Macrophages Maintain Epithelium Integrity by Limiting Fungal Product Absorption 2021-06-16 19:02:31 10.1016/j.cell.2020.08.048
44 Immune suppressive landscape in the human esophageal squamous cell carcinoma microenvironment 2021-06-08 17:15:38 10.1038/s41467-020-20019-0
43 Mechanism of filament formation in UPA-promoted CARD8 and NLRP1 inflammasomes 2021-05-06 06:40:03 10.1038/s41467-020-20320-y
42 Inflammasomes 2021-05-04 18:38:25 10.1101/cshperspect.a016287
41 Multi-region exome sequencing reveals genomic evolution from preneoplasia to lung adenocarcinoma 2021-04-25 20:49:16 10.1038/s41467-019-10877-8
40 Genome-wide methylation analyses of primary human leukocyte subsets identifies functionally important cell-type-specific hypomethylated regions 2021-04-23 01:26:30 10.1182/blood-2013-05-503201
39 MutEnricher: a flexible toolset for somatic mutation enrichment analysis of tumor whole genomes 2021-04-22 17:15:07 10.1186/s12859-020-03695-z
38 The Gut Microbiome Modulates Colon Tumorigenesis 2021-04-20 19:43:47 10.1128/mBio.00692-13
37 The distribution of cellular turnover in the human body 2021-03-28 18:52:04 10.1038/s41591-020-01182-9
36 Regulation of cGAS- and RLR-mediated immunity to nucleic acids 2021-03-18 11:26:51 10.1038/s41590-019-0556-1
35 Regulation of immune responses by the airway epithelial cell landscape 2021-03-14 00:20:17 10.1038/s41577-020-00477-9
34 Liquid biopsies and cancer omics 2021-02-21 12:23:21 10.1038/s41420-020-00373-0
33 Targeting KRAS(G12C): From Inhibitory Mechanism to Modulation of Anti-tumor Effects in Patients 2021-02-19 21:48:58 10.1016/j.cell.2020.09.044
32 SETting Up for Epigenetic Regulation of Advanced Prostate Cancer 2021-02-01 16:42:08 10.1016/j.ccell.2020.08.009
31 Detecting Tumor Antigen-Specific T Cells via Interaction-Dependent Fucosyl-Biotinylation 2021-01-22 01:57:50 10.1016/j.cell.2020.09.048
30 Tumor evolutionary trajectories during the acquisition of invasiveness in early stage lung adenocarcinoma 2021-01-12 19:08:16 10.1038/s41467-020-19855-x
29 Breaking bad: Manipulation of the host response by Porphyromonas gingivalis 2020-12-21 15:25:54 10.1002/eji.201344202
28 Pathogenesis of Important Virulence Factors of Porphyromonas gingivalis via Toll-Like Receptors 2020-12-21 14:29:21 10.3389/fcimb.2019.00262
27 The roles of DNA, RNA and histone methylation in aging and cancer 2020-12-16 22:48:46 10.1038/s41580-019-0143-1
26 Fast and accurate genomic analyses using genome graphs 2020-11-17 18:22:07 10.1038/s41588-018-0316-4
25 The DNA methylation landscape of advanced prostate cancer 2020-11-16 19:17:14 10.1038/s41588-020-0648-8
24 Classification evaluation 2020-11-10 14:14:49 10.1038/nmeth.3945
23 Early Relapse in ALL Is Identified by Time to Leukemia in NOD/SCID Mice and Is Characterized by a Gene Signature Involving Survival Pathways 2020-11-09 17:39:50 10.1016/j.ccr.2010.11.014
22 Preventing preterm births: analysis of trends and potential reductions with interventions in 39 countries with very high human development index 2020-11-03 01:28:59 10.1016/S0140-6736(12)61856-X
21 Is the Environment Associated With Preterm Birth? 2020-10-30 17:21:35 10.1001/jamanetworkopen.2020.2239
20 Understanding the causes of preterm birth: solutions depend on context 2020-10-30 16:44:11 10.1016/S2214-109X(19)30281-5
19 The premature infant gut microbiome during the first 6 weeks of life differs based on gestational maturity at birth 2020-10-27 17:51:33 10.1038/s41390-018-0022-z
18 The shape of the microbiome in early life 2020-10-20 22:53:51 10.1038/nm.4299
17 A viral Exposure Signature Defines Early Onset of Hepatocellular Carcinoma 2020-10-20 22:06:53 10.1016/j.cell.2020.05.038
16 ChIP-seq: Advantages and challenges of a maturing technology 2020-10-08 16:35:45 10.1038/nrg2641
15 Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer 2020-09-21 20:55:54 10.1038/nm.4039
14 The vaginal microbiome and preterm birth 2020-09-21 16:24:29 10.1038/s41591-019-0450-2
13 Microbiome analyses of blood and tissues suggest cancer diagnostic approach 2020-09-10 17:58:20 10.1038/s41586-020-2095-1
12 Metagenomics and transcriptomics data from human colorectal cancer 2020-09-01 16:07:56 10.1038/s41597-019-0117-3
11 SEPATH: Benchmarking the search for pathogens in human tissue whole genome sequence data leads to template pipelines 2020-08-31 20:26:15 10.1186/s13059-019-1819-8
10 Personalized circulating tumor DNA analysis as a predictive biomarker in solid tumor patients treated with pembrolizumab 2020-08-25 11:45:58 10.1038/s43018-020-0096-5
9 The Cancer Genome Atlas Pan-Cancer analysis project 2020-08-13 01:58:08 10.1038/ng.2764
8 The Cancer Genome Atlas (TCGA): an immeasurable source of knowledge 2020-07-30 08:16:30 10.5114/wo.2014.47136
7 The NIH Roadmap Epigenomics Mapping Consortium 2020-07-28 18:09:15 10.1038/nbt1010-1045
6 Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling 2020-07-22 14:02:26 10.1038/nprot.2010.190
5 Methylome analysis using MeDIP-seq with low DNA concentrations 2020-07-21 14:35:27 10.1038/nprot.2012.012
4 ATAC-seq: A Method for Assaying Chromatin Accessibility Genome-Wide 2020-07-14 16:43:27 10.1002/0471142727.mb2129s109
3 Hi–C: A comprehensive technique to capture the conformation of genomes 2020-07-09 13:18:47 10.1016/j.ymeth.2012.05.001
2 DNase-seq: A High-Resolution Technique for Mapping Active Gene Regulatory Elements across the Genome from Mammalian Cells 2020-07-07 13:24:53 10.1101/pdb.prot5384
1 The Cancer Genome 2018-08-24 11:31:42 10.1038/nature07943